Seriously? Nothing? I can’t believe I paid for the Pro version. 🙁
I am having this exact same problem… I enabled permalinks and now my comments form does not show up when it redirects to the “/%postname%/#respond” page. This is only happening on my custom template that I made using WP tags – it seems to work fine when I use the default template index.php file.
I do have an .htaccess file in the root directory, but all it has in it is information about PHP5 – do I need to add something else?