If I understand correctly, you want the Home link to send the viewers to the home of the site, and not that of the blog.
You’ll need to edit your theme to make this work correctly. Could you please post the code of your theme’s index.php to PasteBin and reply with the link so I could take a look at it?
I suppose we could try the wp-hackers mailing list, or just try to resubmit the plugin. That did work for me (I submitted a different plugin before this one and it got through fine).
