Hi
I had the same problem, wordpress does some changes in the .htaccess file when you use different permalinks so, the new .htaccess file needs to load to make the permalink switching and that happens after you reset the server.
Mine got fixed by just a simple apache2 restart command. I don’t know if your’s the same case or not coz you are using Godaddy and Windows server and you may have gotten public_html folder.
