Well, I finally came across a previous thread somewhere else that talked about the wordpress directory being moved and they were having a lot of the same problems I was.
It happens there is another file that has a line that points to the wordpress file, wp-blog-header.php. In the INDEX.php, I found that the path was missing the wordpress directory. The correct path is below:
/** Loads the WordPress Environment and Template */
require( dirname( __FILE__ ) . ‘/wordpress/wp-blog-header.php’ );
Now everything works fine. It even cleared up some issues I was having with the Mobile view.
