I was having problems with the name showing up incorrectly for custom post types. It might be nice to have this fallback on line 639.
//Run through a filter for good measure
if ($term->taxonomy == null || $term->taxonomy == "") {
$term->name = apply_filters('get_' . $term->name, $term->labels->name);
} else {
$term->name = apply_filters('get_' . $term->taxonomy, $term->name);
}