in the file custom-post-type-maker.php edit line 203 from
if ( $cptm_withfront ) { $cptm_rewrite_options[‘with_front’] = $cptm_withfront; }
to
$cptm_rewrite_options[‘with_front’] = $cptm_withfront;
then go to your permalinks setting and save to flush the rewrite rules.
The javascript adds a css style to the element giving it a top value of 40px, to prevent that from changing the value listed on line 581 in flare.css you must add the !important declaration to the rule like so
top: 100px !important;
