Footer and Posts No Show

Hi All,

so I know that this works on my other custom themes but for some reason not on this one… http://beta.accesstaxaccounting.com/ata-resources-and-help/ata-blog/

In My index.php I have this….

<?php/*
Template Name: Index page
*/
?>
<?php get_header(); ?>
<div id="page-wrapper">
  <main role="main">
    <section id="blogpage-article">
      <section id="blog-post-articles">
        <?php
          $paged = ( get_query_var( 'paged' ) ) ? get_query_var( 'paged' ) : 1;

          $args = array(
             'posts_per_page' => 6,
             'paged' => $paged
          );

          $custom_query = new WP_Query( $args );
        ?>
        <?php get_template_part('loop'); ?>
        <div class="clearfix"></div>
      </section>
      <section id="blog-pagination">
        <?php if (function_exists("pagination")) {
         pagination($custom_query->max_num_pages);
      } ?>
      </section>
    </section>
    <div class="clearfix"></div>
  </main>
</div>
<?php get_footer(); ?>

My loop.php is this….

<?php if (have_posts()) : while (have_posts()) : the_post(); ?>
  <article id="post-<?php the_ID(); ?>" <?php post_class(); ?>>
    <?php if (has_post_thmbnail()) : ?>
      <a href="<?php the_permalink(); ?>" title="<?php the_title(); ?>">
        <?php the_post_thumbnail('bloglanding_post_thumbnail'); ?>
      </a>
    <?php endif; ?>
    <h2>
      <a href="<?php the_permalink(); ?>" title="<?php the_title(); ?>"><?php the_title(); ?></a>
    </h2>
    <?php the_excerpt(); ?>
    <a href="<?php the_permalink(); ?>" class="blog-btn">READ MORE...</a>
  </article>
  <?PHP endwhile; ?>
  <?php else: ?>
  <article>
    <h2><?php _e("Sorry, nothing to display.", "atacustom"); ?></h2>
  </article>
<?php endif; ?>

As you can see from that page the footer is not showing up and none of the six basic blog posts are not showing either whatsoever! I have double and triple checked the code multiple times again themes I have built in the past and all is the same there! Am at a Loss. Many thanks

Phillip Dews