wp_register_script and enqueue_script help

I am currently trying to install the Bootstrap framework as my base template for WP. I have the index.php, header.php, footer.php created and the css files registered by the bloginfo/@import process.
But i am having trouble getting the hook to and the register_script/enqueue_script process.
Here is what i have at the moment.

This was removed from the footer.

<!-- Le javascript
    ================================================== -->
    <!-- Placed at the end of the document so the pages load faster -->
    <script src="../assets/js/jquery.js"></script>
    <script src="../assets/js/bootstrap-transition.js"></script>
    <script src="../assets/js/bootstrap-alert.js"></script>
    <script src="../assets/js/bootstrap-modal.js"></script>
    <script src="../assets/js/bootstrap-dropdown.js"></script>
    <script src="../assets/js/bootstrap-scrollspy.js"></script>
    <script src="../assets/js/bootstrap-tab.js"></script>
    <script src="../assets/js/bootstrap-tooltip.js"></script>
    <script src="../assets/js/bootstrap-popover.js"></script>
    <script src="../assets/js/bootstrap-button.js"></script>
    <script src="../assets/js/bootstrap-collapse.js"></script>
    <script src="../assets/js/bootstrap-carousel.js"></script>
    <script src="../assets/js/bootstrap-typeahead.js"></script>
    <script>
      !function ($) {
        $(function(){
          // carousel demo
          $('#myCarousel').carousel()
        })
      }(window.jQuery)
    </script>
    <script src="../assets/js/holder/holder.js"></script>'

This is the wp function that i called for accessing the functions.php file i have created
<code><?php wp_footer();?></code>

In functions.php i have this code

function bootpress_scripts_with_jquery() {

wp_register_script(‘custom-script’, get_template_directory_url.() . ‘bootstrap/js/bootstrap.js’ array(‘jquery’));
wp_enqueue_script(‘custom-script’);
}

add_action(‘wp_enqueue_scripts’ , ‘bootpress_scripts_with_jquery’);
`
Now do i need to add a wp_register_script for the jquery.js and the holder.js url’s as they were in the code that was deleted. And as for the on load script do i leave that in the footer or what is best practice?