Works great with Piwik, I just pasted the code provided by Piwik into the footer section and clicked save. The tracking code is now on every page in my site and working fine.
There are no issues with escaping.
Works for me. Gives me access to html head or footer for tracking code or anything else. And it doesn't escap anything for me.
Additionally you can have (small) css changes in the head. If you use a default template, but only want to have this one little additional change you cant do in the theme settings;)
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