I already had the last version of WP-Print running on my site, so I didn't have to add the print code or change my .htaccess. It does exactly what you said it does :)
I renamed the old version wp-print.old, extracted the new WP-Print to the root folder, refreshed my site, and clicked the print link. All of the inline links in the article displayed in an ordered list at the bottom of the print page.
One question, though. Is it possible to include a function that will strip out images and <!--Adsense--> code? That would make this absolutely PERFECT!! Not that it isn't already awesome, but you know what I mean.