I have a WP site in a subdirectory and am preparing to follow the process outlined at http://codex.wordpress.org/Giving_WordPress_Its_Own_Directory to have it run from the root directory.
I am supposed to copy not delete the htaccess from the subdirectory to the root. The part I am confused about is if W3TC is going to write its htacess stuff for caching to the htaccess in the subdirectory or to the one in the root. And is there anything else I need to know/do to make W3TC run properly with the WP in subdirectory/run from root setup?
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