I just started using Manual Control, and I really appreciate this plugin.
In the latest update to Jetpack 2.0.2 there is now a notice in the admin menu (circle with number 4 in it) letting me know that there are new modules. Since they were not activated due to Manual Control, do you think this notification will go away eventually?
If I remember right in the past it went away after I clicked the "Learn More" button in new modules and either deactivated or configured them. I can get used to the notification, but I could see a client wondering why it's there and why I don't do something about it.