I downloaded the Woo Ver 3.0.9 build from the repository (enabled Advanced View/Previous Versions -> dropdown list) to my desktop and my antivirus software 360 Total Security (https://www.360totalsecurity.com) warned of a trojan in the file:
Trojan File: woocommerce.3.0.9.zip
Risks: Trojan (virus.vbs.starupxls.b)
and so I think you may have a problem!
I also downloaded ver 3.1.0 and it does not generate the virus software.
While you might just say “use the newest version” the theme I am using has many woo templates, and I see they need to update 2 of them for your new version which I am certain they will have released an update within the next day (they are superb about this – the Striking MultiFlex theme at ThemeForest – incredibly well supported for 7 yrs now that I have been using them – they pump out updates like clockwork).
In any case, the virus warning is the issue at hand of which I am notifying you to assess.
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