Hi I am having this same issue on multiple sites.
Anytime I have the All In One Webmaster plugin installed, the Theme Options section of the backend does not display properly. I suspect most of the themes that are having this issue use some portion of the options tree admin section.
Here is a page with screenshots of the issues:
I am a designer and use this plugin in about 72 different sites, currently having this issue with about 20 different sites. All running current versions and everything is up to dat with the plugins and the wordpress version.