Upgraded to 3.3 and got the theme bleeding into the admin console so I had read that the "Hotfix" plugin in fixes this so I installed it.
The theme developer updated their theme to fix this issue. So disable Hotfix and update the theme.
Admin console is clean without the Hotfix plugin.
So I started to test the site.
The Google Analytics code in footer.php does not show up on the web page.
I have my categories setup to use the_content instead of the_excerpt. It shows the_excerpt.
Re-enabled the Hotfix plugin and all is well.
Any ideas as to what's happening?