Not really a fix but doing a clean install of WordPress has stopped the above issues from occurring. A bit painful, but acceptable.
I’m having exactly the same problem but I wonder why a clean install would be necessary; the /wp-includes/wp-classes.php will still not exist after a clean install (/wp-includes/classes.php does exist, but I’ve got the latest version so how would a clean install make any difference?)
Any help would still be appreciated.
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