I recently had an issue with ordering of pages, and believe it is due to qTranslate.
The problem is the following: I am using two languages on a wordpress install, 2.6.1, with the default theme. The page ordering doesn't work anymore when I have qtranslate activated.
I was using the previous version, and have now upgraded to 1.1.3, yet the problem remains. To check I wasn't going crazy, I did a clean new install elsewhere and clearly the problem appears when I start using qtranslate. I have also tried using different themes (like K2) and the problem remains.
Is this something that can be tweaked? Am I the only one experiencing this problem? I haven't found much out there on the forums.