Problem with high,lighting wp files to uppload

Hi
I followed Solostream Blog steps to install WordPress on my server. I use FileZilla for that and completed the relevant steps, such as editing wp-config-sample.php.Finally when I was just highlighting all the folder to upload,It didn’t worked and suddenly I saw a pop-up window saying 308 files from ../wp moves to ../wp-includes. I tried to stop it but could not. After that disappeared wp-admin folder. What did I do wrong that triggered this problem?
I am new to the subject so any expert help is greatly appreciated.
Thanks