Firs of all, congratulations for your work, I think it's impressive!
I just cloned a site in order to make proofs before updating the real site, I can see the cloned site homepage perfectly, but if you click anywhere you'll get this error.
The requested URL /index.php was not found on this server.
Additionally, a 404 Not Found error was encountered while trying to use an ErrorDocument to handle the request.
I didn't get any error while backing up my site or when transferring to the other host, all was smooth. I created a new db, new user, with all privileges, and it was populated fine. Ididn't make the backup incremental, nor the database backup, if that helps... I'm also running 3.0.4 version of X Cloner.
Any idea of what's going on? My server status is ok, and I have others WP installations in the same hosting running fine.
Here are the links:
Thanks a lot in advance!