If I use (( and )) syntax, footnotes which have links in, show inline rather than in the footnotes section. The work around is to use the <footnotes> </footnotes> tags but not sure if this method is deprecated, as the docs say this is the old school way of referencing links?
Welcome to WordPress ((Find out more and <a href="http://wordpress.org">download the installer here</a>)) . This is your first post ((you bet)). Edit or delete it, then start blogging!
detects only the second footnote.