Hello - thanks for this plugin!
Any suggestions or clues on MultiSite configuration? I've installed the plugin. I am super-admin. I now get emails for all "my sites" (e.g.: site1.mysite.com, site2.mysite.com, etc.). Each email has the same file list, which contains files from all sites in the multi-site, and which may or may not have any updates associated with the specific site that is getting the email (e.g. - the notification sent re site2.mysite.com might only list files associated with site1.mysite.com).
Similarly, the "View File Changes and Clear this Alert" dialog that appears in dashboard of site2.mysite.com contains files not associated with site2.
I think I understand the issues you might face with associating files in the file system with specific sites in MultiSite. I wonder if there is a way to set it up so the multisite super-admin gets 1 email with all the notifications, and the admins for the subsites don't see anything, either email or on the dashboard?