There is no options to control creation of an .HTACCESS file;
this became big issue, speciali, when blog is in subdiretory.
If there is created file, other plugins may not work or will work partly, as it takes control of some CSS,SWF or other "media". So they start to become as error 404, but redirect to main page example.com/ from example.com/someBlogDir
Please provide option page for that proceess. Fo example I don't need that file!
15 min spend on research of issue.