I have recently modified your plugin on my install so I can include rel="lightbox" in a slide when it has a link included with the slide. So when someone clicks on the slide it loads with the lightbox plugin I have included.
I am extremely impressed with this plugin and am very pleased with how you have created. However I am in fear that when I update the plugin I will loose the ability to ensure the links included within my slideshow will open up using my lightbox plugin.
I'm hoping you can include a feature to allow this to work in future updates.