I am testing out Jetpack 1.2 on a test server before deploying to my multisite network. When I enable Jetpack 1.2 for the first time on a new site, I see an "11" notification badge because there are 11 modules that are new to that site. Okay, great, but I cannot make that badge disappear.
On sub sites that had the 1.1.3 version of Jetpack previously connected to WordPress.com, I see a "3" because there are 3 new features, but that badge goes away as soon as I click on Jetpack in the admin menu.
I tried the test on another two brand new test sites, the 11 appears after connecting to WordPress.com for the first time, but does not go away. Also, I cannot configure "Sharing" on sites where Jetpack is newly enabled. Sharing works just fine on sites where 1.1.3 was enabled first. I even tried deactivating and then activating the Sharing feature.
I tried disconnecting the site from WordPress.com and reconnecting. At the Network Admin level, I also tried the Updates --> Update Network command. I even tried Network Deactivating the Jetpack plugin then re-enabling it, this did not fix the subsites that still have the 11 badge.
So on six test sites where Jetpack was already enabled, the upgrade was seamless. But the three sites where I freshly activated Jetpack I saw these problems.
Is this a problem that others can reproduce? I want to be sure before I upgrade my network.