First great plug in thank you.
The problem I am having is when the post type you are viewing has a taxonomy term that is also associated with another post type it gets added to the count.
Example, I have 2 cpt: solutions and stories and I have a taxonomy suppliers, with the terms: Supplier 1, Supplier 2, Supplier 3.
I create a solutions post, assign it Supplier 1 & Supplier 2, create a stories post, assign it Supplier 2 & Supplier 3. When I look at either archive it will say there are 2 entries for supplier 2, even though there is only one post.
I believe this same issue was brought up by anointed here
Just wondering if any fix had come of it, I have tried the 2.0 dev version with no luck.