My WP is installed in it's own dir, with htaccess redirects so that the URL is the top domain . i.e:
domain.com -> domain/blog
I have other directories serving other purposes under the main dir for some other webapps I have. e.g.
Im my BWPS 404 logs, I'm seeing 404 errors for /mywebapp/doSomething.php.
Any idea why? Does BWPS check the access_log?