Only caching the index page?

I am a new user of Wp Fastest Cache and I am having a slight problem with it.

After having issues with site visitors holding down F5 and crashing my server, I decided to use this plugin to help stop them. It seems to work , but only on the (front page) index page.

I am monitoring my server CPU usage with HTOP in an SSH Terminal, and while mass refreshing my front page, the CPU utilization barely increases. If I click on an individual post and mass refresh, my CPU utilization shoots quickly to 100 percent of both processors.

Do you know what would cause this?

Here is my htaccess file..

# BEGIN WpFastestCache
<IfModule mod_rewrite.c>
RewriteEngine On
RewriteBase /
AddDefaultCharset UTF-8
RewriteCond %{HTTP_HOST} ^www\.(.*)$ [NC]
RewriteCond %{REQUEST_URI} !^/wp-login.php
RewriteCond %{REQUEST_URI} !^/wp-admin
RewriteCond %{REQUEST_URI} !^/wp-content
RewriteRule ^(.*)$ http://%1/$1 [R=301,L]
RewriteCond %{REQUEST_METHOD} !POST
RewriteCond %{QUERY_STRING} !.*=.*
RewriteCond %{HTTP:X-Wap-Profile} !^[a-z0-9\"]+ [NC]
RewriteCond %{HTTP:Profile} !^[a-z0-9\"]+ [NC]
RewriteCond %{HTTP_USER_AGENT} !^.*(iphone|sony|symbos|nokia|samsung|mobile|epoc|ericsson|panasonic|philips|sanyo|sharp|sie-|portalmmm|blazer|avantgo|danger|palm|series60|palmsource|pocketpc|android|blackberry|playbook|ipad|ipod|iemobile|palmos|webos|googlebot-mobile|bb10|xoom|p160u|nexus).*$ [NC]
RewriteCond /var/www/intranet/v3/wp-content/cache/all/intranet/v3/$1/index.html -f
RewriteRule ^(.*) "/intranet/v3/wp-content/cache/all/intranet/v3/$1/index.html" [L]
</IfModule>
# END WpFastestCache
# BEGIN GzipWpFastestCache
<IfModule mod_deflate.c>
AddOutputFilterByType DEFLATE image/svg+xml
AddOutputFilterByType DEFLATE text/plain
AddOutputFilterByType DEFLATE text/html
AddOutputFilterByType DEFLATE text/xml
AddOutputFilterByType DEFLATE text/css
AddOutputFilterByType DEFLATE application/xml
AddOutputFilterByType DEFLATE application/xhtml+xml
AddOutputFilterByType DEFLATE application/rss+xml
AddOutputFilterByType DEFLATE application/javascript
AddOutputFilterByType DEFLATE application/x-javascript
AddOutputFilterByType DEFLATE application/x-font-ttf
AddOutputFilterByType DEFLATE application/vnd.ms-fontobject
AddOutputFilterByType DEFLATE font/opentype font/ttf font/eot font/otf
</IfModule>
# END GzipWpFastestCache
# BEGIN LBCWpFastestCache
<FilesMatch "\.(ico|pdf|flv|jpg|jpeg|png|gif|js|css|swf|x-html|css|xml|js|woff|ttf|svg|eot)(\.gz)?$">
<IfModule mod_expires.c>
ExpiresActive On
ExpiresDefault A0
ExpiresByType image/gif A2592000
ExpiresByType image/png A2592000
ExpiresByType image/jpg A2592000
ExpiresByType image/jpeg A2592000
ExpiresByType image/ico A2592000
ExpiresByType text/css A2592000
ExpiresByType text/javascript A2592000
ExpiresByType application/javascript A2592000
</IfModule>
<IfModule mod_headers.c>
Header set Expires "max-age=2592000, public"
Header unset ETag
Header set Connection keep-alive
</IfModule>
FileETag None
</FilesMatch>
# END LBCWpFastestCache
Options -Indexes
#Protect the wp-config.php
<files wp-config.php>
order allow,deny
deny from all
</files>
## Apache mod_deflate settings.
#AddOutputFilterByType DEFLATE text/html text/plain text/xml text/css application/x-javascript application/javascript application/ecmascript application/rss+xml text/x-js
#BrowserMatch ^Mozilla/4 gzip-only-text/html
#BrowserMatch ^Mozilla/4\.0[678] no-gzip
#BrowserMatch \bMSIE !no-gzip !gzip-only-text/html

https://wordpress.org/plugins/wp-fastest-cache/