I followed these instructions ( http://codex.wordpress.org/Giving_WordPress_Its_Own_Directory ) to move my blog index.php file to the root directory so that my Blog would be at http://www.mysite.co.uk instead of http://www.mysite.co.uk/wordpress
Now all the links to categories, comments etc. (which are in my theme's sidebar.php file are still pointing to mysite.co.uk/wp-admin/post.php and mysite.co.uk/wp-admin/profile.php etc. instead of mysite.co.uk/wordpress/wp-admin/profile.php which is where all the files still reside.
Is there a way to tell my theme (MW1.2) that all files are not in the root directory, but they are still in the wordpress directory as they always have been? It seems to be getting its directions from the settings/general section which I had to alter to