As of Jetpack moving to the 2.0 branch, it is consistantly braking my theme by pushing the sidebars on all pages to the right side of the theme instead of them being on either side of the main content part of the page.
Having checked the theme with the developer, they indicate that Jetpack is the cause of the issue in that it appears to be modifying the sidebar locations when it attempts to inject the code for the comment part of the plugin.
The thing is however, save for the stats module, nothing else is being used and the theme is breaking.
Any ideas of a fix?
What changed between 1.9.2 which was perfect and 2.0?