Javascript block my shortcodes

I add this script in the footer:

<script type="text/javascript" src="http://jqueryjs.googlecode.com/files/jquery-1.3.2.min.js"></script>
<script type="text/javascript" src="http://www.gmarwaha.com/jquery/jcarousellite/js/jcarousellite_1.0.1.pack.js"></script>
<script type="text/javascript"><!--
$(function() {

$("#MyCarousel").jCarouselLite({
btnNext: ".next",
btnPrev: ".prev",
vertical: true,
visible: 3,
auto:2000,
speed:1000
});
});
// --></script>

The script works very good but my woothemes shorcode stop works. Also the menu’s arrows doesn’t appear! Please anyone can help me?