First off, iTunes Affiliate Pro does not take your commissions. It simply rewrites the URL of the standard iTunes store link to an affiliate LinkShare link. Did you use the correct LinkShare affiliate ID?
If you have LinkShare URLs on your site, you need to change them to the standard iTunes URL. In my next release, I will write an exception to leave these URLs alone. You might be seeing a problem there.
If you deactivate the plugin your URLs will go back to whatever they are in the database.
Seeing as how you had the plugin installed for only a few minutes, I doubt that would effect your revenue and it does not alter your content in the database.
Let me know if you have any other questions.
I apologize for my previous post.
I am marking this as “resolved.”
The issue was 100% with LinkShare–the change happening on 2/2 was nothing more than a coincidence.
I’m sorry for leaving that comment blaming your plugin.
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