Would like to share a simple fix to a multi-hour search. Installed Multi Sites with sub-directories, all went well until I tried to access the added site or the original sites links. What I found on the WP Codex is that I must edit Virtual Host In Apache. Made the below changes bounced Apache and all is well. Hope this helps.
Options Indexes FollowSymLinks MultiViews
AllowOverride Fileinfo Options <————Change Here From”NONE” to
allow from all<——–This helps also
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