Ha! I didn't notice the plugin got updated in the few days I was working with it. Thanks for the update!
This however leaves me with a few questions:
1. Should I delete the code I put into my .htaccess file, deactivate the plugin on the subsites and start over using the network wide setup?
2. I recently activated cloudflare for all my domains and am wondering how to set this up if I change to a network wide setup of the plugin. Each subsite is mapped to a unique domain .com.au .nl and .tv. I have set these domains up as individual sites in cloudflare. Should I just activate cloudflare in the network wide setup? What would I put under domain section? Or should I activate the cloudflare section in the plugin on each subsite? Just want to set this up right.
Thanks heaps for all the help guys!