What theme are you using? How about using a theme that already has two navigation areas?
Working on a theme that has most of the elements you need would be better to work on. Try using Storefront theme. It’s a free theme made by Woothemes, and it has two navigation areas on top.
Thank you so much for replying!
I have Genesis and a child theme. I installed a plugin for genesis/woocommerce and that helped the two work together better.
I think there is something that needs to be edited in the php – something is interfering with any nav menu plug in (including Woodojo). Not sure how to fix that though.
Thank you!