So I’ve just been running into this problem the last week or so. I am running the twenty twelve theme, but I’ve overhauled the code with my own personal code and styles just relying on the twenty twelve styles to back up my own code. Something that has been happening though is that my header.php file (which is all custom code) somehow keeps deleting itself on a daily basis. when it does that then it screws everything else up…I’ve looked all over and can’t seem to find anything similar to this problem so any insight would be extremely helpful!!!
I’ve also looked to see if it could have been hacked, but no code has been inserted as far as I can tell….
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