I have searched and read all of the Google problems on the forum, but none seem to fix the problem I am having.
I have only made two changes to my site recently: 1. I changed the theme 2. I changed the structure of the permalinks removing the "index.php"
Then, it seems, google stopped indexing the entire site -- up to that point it indexed very quickly. I changed the permalinks back to the way they were and changed the theme back and forth.
Anyone have any thoughts on what could be going on here?