Ok Boys and Girls, I wrote a nice detailed support post asking why all my CSS settings were being ignored. Just before posting it I tried ONE more thing and wouldn't you know, I figured it out. But I see this as a bug and I'm sure others have run into it so I thought I'd still share.
ISSUE: I had a widget in my primary sidebar and another one in my footer sidebar. But when I changed formatting for the primary, it never showed on the page, it always used the other widget's settings.
MY DIAGNOSIS: When you use more than one widget, the last widget on the page settings are used for all the widgets. The CSS printed out is not unique to the widget but uses the same selectors for all widgets with this plugin. This effectively overwrites the first settings.
SUGGESTION: Can a unique identifier be tagged onto the classes and selectors being used so we can control multiple widgets independently? Seems like that would be an easy fix to me. Perhaps in a future release?