I have a CPT that has categories and I display the CPTs on the /category/ pages. If I select the Category filter from Re-Order and choose a category, then order its posts, those changes only affect custom queries I have on a different page.
However, if I choose Archive as my filter (all CPTs) and sort them there, it works.
I need to be able to select the category to sort though, or else the Advanced plugin is useless to me.
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