I'm having issues with Auto ThickBox Plus in that it seems to be conflicting with Slider PRO (http://codecanyon.net/item/slider-pro-wordpress-premium-slider-plugin/253501).
The UI for Slider PRO does not work properly with Auto Thickbox Plus is activated. I need Auto Thickbox more than I do the slider (even though I paid for the slider plugin).
I'm hoping someone here has experienced this and knows how to work around it. Thanks!