@MickeyRoush: Well, if you are able to find some time to diagnose the problem, we may be able to help in a more useful way. I understand that it's hard and takes time to find these things. We work very hard on compatibility and there are so many plugins out there that are not as diligent that it's hard to keep BD running in all cases.
We have seen all the threads you noted above. Without specific examples or someone willing to find the conflicting plugin, it's still difficult to solve the problem. We have one pending conflict with WP-PageNavi that we're working on. Beyond that, I don't know what to say. If the workaround you have works, I guess that's good enough for now. Let us know if you want to go deeper into this.
@wasmane: Thanks, I will have my developer look into it.