in 3.5 I do the following:
wp_nav_menu(array('theme_location' => 'footer_links', 'menu_class' => 'nav nav-pills', 'container' => 'div', 'container_class' => 'footerCenterNav'));
This created a footer, see here which you can see the footer links are lined up properly.
Now lets switch over to this site which is running 3.6-beta3-24284 and using the same peice of code for the footer and we see that the footer links are broken.
No: There are no plugins installed - so theirs nothing for me to disable. No: I cannot switch back to the default theme as I am developing this theme from the ground up.
Can some one tell me why the same piece of code works in 3.5.1 but breaks in 3.6 beta 3?