So you updated the themes via the wordpress admin updates page (like at http://www.sitename.com/wp-admin/update-core.php ) and the issues still show up on the scan results page? Did a new scan result in finding the same problems?
Thanks!
tim
Yes updated from the WP updates page. Selected all themes and clicked update. After update was done, I did a wordfence scan and get the notices that all the updated pages have changed from the repository. This could be because the repository has not been updated but also could be that WordFence has not downloaded the latest updates to their servers for the scan comparison. (I did not think about this until a couple of days after the post.)
If I don’t do the repairs, the scan may after a couple of days not show any discrepancies. But mostly I did repairs right away. I think the last time this happened, I just let it sit for a couple days then did a scan and it was ok. So it may be a timing thing about when the repository changes are downloaded to your servers. (At least I would imaging that is how you are doing this comparison check. As I would think WordPress.org would not appreciate WF slamming their servers all the time.
Lets let it roll for a bit and the next time I have this happen, I will let it alone for a couple days and see if it self corrects.
But the scan does indeed sometimes show there is a difference between repository and the updated version if scan is done right after update. This is not an every time thing.