I installed WPMU and Buddypress according to the install files instructions.
My home page shows only a couple colored rows on top. I activated the buddypress home theme as well.
The source code shows only this
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" dir="ltr">
<head profile="http://gmpg.org/xfn/11">
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8" />
<title>FaithToo</title>
<meta name="generator" content="WordPress 2.7" /> <!-- leave this for stats -->
<link rel="stylesheet" href="http://faithtoo.com/wp-content/themes/buddypress-home/style.css" type="text/css" media="screen" />
<link rel="alternate" type="application/rss+xml" title="FaithToo Blog Posts RSS Feed" href="http://faithtoo.com/feed/" />
<link rel="alternate" type="application/atom+xml" title="FaithToo Blog Posts Atom Feed" href="http://faithtoo.com/feed/atom/" />
<link rel="pingback" href="http://faithtoo.com/xmlrpc.php" />
<link rel="EditURI" type="application/rsd+xml" title="RSD" href="http://faithtoo.com/xmlrpc.php?rsd" />
<link rel="wlwmanifest" type="application/wlwmanifest+xml" href="http://faithtoo.com/wp-includes/wlwmanifest.xml" />
<script type='text/javascript' src='http://faithtoo.com/wp-includes/wordpress-admin-bar/wordpress-admin-bar.js?ver=3.1.1'></script>
<meta name="generator" content="WordPress 2.7" />
<!--[if IE 6]>
<link rel="stylesheet" href="http://faithtoo.com/wp-content/themes/buddypress-home/css/ie/ie6.css" type="text/css" media="screen" />
<![endif]-->
<!--[if IE 7]>
<link rel="stylesheet" href="http://faithtoo.com/wp-content/themes/buddypress-home/css/ie/ie7.css" type="text/css" media="screen" />
<![endif]-->
</head>
<body>
<div id="search-login-bar">
This is odd because I re-uploaded all files as is.