I also have had issues using both wp super cache and autoptimize I will try this and report back . 1 other thing is I am on cloudflares network and have there minify enabled which is a weak minify. I disable cloudflares and still have minify issues using both wp super cache and autoptimize together my website is http://conservativeread.com running on swift premium theme
update: ok so all I can use from autoptimize is html compression css and java break my theme. any suggestions?