I want to be able to exclude jquery.js and jquery.ui.core.min.js from BWP Minify.
Adding the handles,
to the "Scripts to be ignored (not minified)" setting has no effect.
I have previously been using Use Google Libraries plugin as well as BWP Minify for managing js and css. This has worked well with the script links for
http://ajax.googleapis.com/ajax/libs/jqueryui/1.10.3/jquery-ui.min.js being output into the header above BWP Minify's js links.
This was with BWP Minify set to process js automatically.
Now, if I enable Use Google Libraries plugin the ajax.googleapis.com strings are included in the BWP Minify file string.
A second part of the problem is this link being generated as well.
It appears to be the same as described (with work around) here.