@John - Thanks for your work in putting together this plug-in.
The issue I've had with Custom Post Types is that I have not been able to integrate my custom taxonomy in the permalink structure. So for example:
1. I have a custom post type called "portfolio"
2. I have a custom taxonomy called "portfolio-type" - (e.g. website, brand-identity, etc.) that's linked to my "portfolio" custom post type.
So in a scenario where I create a new portfolio item called "sample" and file it under the "websites" category within my "portfolio-type" taxonomy, I would like for my permalink structure to read:
http://mysitename/portfolio/websites/sample
I installed your plugin and then tried to make my permalink structure " %post_type%/%portfolio-type%/%postname " but the url that is generated as:
http://mysitename/portfolio/%portfolio-type%/sample
I have already tried to flush the permalink structure numerous time by visiting the permalink page but to no avail.
Is it simply not possible to add a custom taxonomy to a custom post type permalink structure? Thanks in advance for your feedback, this one has me stumped...