I came upon the thread below doing a google search, and while it seems the previous poster also thought about affecting the primary nav, he must have gone an alternate route instead.
I am trying to use the plugin with a free child theme (Tote, by Themedy) that doesn’t have a secondary sidebar, even when enabled in Genesis settings. I thought I might go around the need for a secondary menu by having a different primary menu on specific pages – is there any way I can make the plugin affect the primary nav instead?
It is possible to modify it so that it works with the primary menu instead of the secondary. Providing instructions on how to do that is beyond the scope of the support I provide for the plugin.