I figured out the issue. Just solved it.
The problem is a function injected into wp-settings.php
Its causing a huge mess,
the function is called counter_wordpress
It has tons of encrypted data that loads info on your site, I am writing a blog on it, and will post it soon.
DELETE THAT FUNCTION. its near the end of your wp-settings.php
But before you modify the file check the last time it was updated and see if it is the same as other files on your server, otherwise it may be in a different location on yours. The script is dynamic and works in any function, it may be randomized.
Check all your file permissions and see if they have changed.
If anything scan your wordpress directory for wp_head and see if anything looking like the code I am about to post in the blog is there.
Will leave instructions on blog as well.