I love this plugin, yes :).
I have read your FAQ and I found this:
Why does filtering by HTML element, class or id not prevent processing?
wp-Typography does not have access to HTML stored in your theme files. It only has access to the content passed to it (i.e. post Title and Content); it is unable to determine the greater contextual awareness...
But I use wp_title to generate my page's title, is there any thing I can do to prevent wp-typography from processing <title></title>? I am using: <title>wp_title($args);</title>
Please advise. Thanks!