This is a great plugin, thank you, but I have come across a problem. The setup assistant appears to just tick/check all of the boxes while using WordPress 3.2 for me. It works in 3.1.3, admittedly on a different server. I got around it by copying the settings manually from the 3.1.3 setup to the 3.2 one.
I used the plugin version 1.7.0 on both.